Function reference • BioCro

All functions

add_time_to_weather_data(): Add a time component to input

annualDB annualDB2: Miscanthus dry biomass data.

catm_data: Global annual mean atmopspheric CO2 levels

soybean_weather: Champaign, IL weather data for Soybean-BioCro

weather: Champaign, IL weather data

crop_model_definitions: Crop model definitions

default_ode_solvers: Default ODE solver settings

validate_dynamical_system_inputs(): Validating dynamical system inputs

get_all_modules() get_all_quantities() get_all_ode_solvers(): Get lists of modules, quantities, and solvers

get_growing_season_climate(): Truncate weather data to one growing season

miscanthus_x_giganteus: Miscanthus model definition

initialize_csv() add_csv_row() update_csv_cases(): Define and modify BioCro module test case files

module_creators(): Create instances of modules

module_paste(): Prepend library name to module names

module_testing: The BioCro module testing system

module_info() quantity_list_from_names() evaluate_module() module_response_curve(): BioCro module functions

obsBea: Miscanthus assimilation field data

obsBeaC: Complete Miscanthus assimilation field data

obsNaid: Miscanthus assimilation data

partial_run_biocro() partial_evaluate_module(): Convenience Functions for Partial Application

run_biocro(): Simulate Crop Growth with BioCro

soil_parameters: Soil properties

soybean: Soybean-BioCro model definition

soybean_clock: Soybean-BioCro circadian clock model definition

system_derivatives(): Calculate Derivatives for Differential Quantities

test_module() case() cases_from_csv(): Run BioCro module test cases

test_module_library(): Run module test cases for an entire BioCro module library

willow: Willow model definition